IL_6ZJ3_220

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGA(OMC)G*CCG(PSU)(OMG)AGU(A2M)UC

Length

16 nucleotides

Bulged bases

6ZJ3|1|S1|C|638, 6ZJ3|1|S1|G|643

QA status

Modified nucleotides: OMC, PSU, OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|618
6ZJ3|1|S1|G|619
6ZJ3|1|S1|A|620
6ZJ3|1|S1|OMC|621
6ZJ3|1|S1|G|622
*
6ZJ3|1|S1|C|637
6ZJ3|1|S1|C|638
6ZJ3|1|S1|G|639
6ZJ3|1|S1|PSU|640
6ZJ3|1|S1|OMG|641
6ZJ3|1|S1|A|642
6ZJ3|1|S1|G|643
6ZJ3|1|S1|U|644
6ZJ3|1|S1|A2M|645
6ZJ3|1|S1|U|646
6ZJ3|1|S1|C|647

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SZ

Ribosomal protein eS24

Chain Se

Ribosomal protein eS30