IL_6ZJ3_222

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6ZJ3|1|S1|U|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_222 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.1684

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6ZJ3|1|S1|G|661
6ZJ3|1|S1|U|662
6ZJ3|1|S1|C|663
*
6ZJ3|1|S1|G|690
6ZJ3|1|S1|C|691

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

Ribosomal protein uS3

Chain SD

Ribosomal protein uS4

Chain SP

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30