IL_6ZJ3_225

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACU*A(A2M)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_225 not in the Motif Atlas

Homologous match to IL_4V88_417

Geometric discrepancy: 0.1074

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZJ3|1|S1|A|728
6ZJ3|1|S1|C|729
6ZJ3|1|S1|U|730
*
6ZJ3|1|S1|A|1370
6ZJ3|1|S1|A2M|1371
6ZJ3|1|S1|U|1372

Current chains

Chain S1

18S rRNA

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain ST

Ribosomal protein uS15