IL_6ZJ3_250

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_250 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1724

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZJ3|1|S1|G|1277
6ZJ3|1|S1|A|1278
6ZJ3|1|S1|A|1279
*
6ZJ3|1|S1|U|1343
6ZJ3|1|S1|C|1344
6ZJ3|1|S1|U|1345

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L5

Ribosomal protein eL42

Chain LP

Ribosomal protein uL2

Chain SA

Ribosomal protein eS1

Chain ST

Ribosomal protein uS15