IL_6ZJ3_260

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6ZJ3|1|S1|A|2134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_260 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1575

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZJ3|1|S1|G|1556
6ZJ3|1|S1|A|1557
*
6ZJ3|1|S1|U|2133
6ZJ3|1|S1|A|2134
6ZJ3|1|S1|C|2135

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain SF

Ribosomal protein uS5

Chain Sb

Ribosomal protein eS26