IL_6ZJ3_261

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

6ZJ3|1|S1|G|1560

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_261 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2172

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|S1|C|1558
6ZJ3|1|S1|G|1559
6ZJ3|1|S1|G|1560
6ZJ3|1|S1|A|1561
*
6ZJ3|1|S1|U|2130
6ZJ3|1|S1|PSU|2131
6ZJ3|1|S1|G|2132

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain S3

Transfer RNA; tRNA

Chain S5

A-site tRNA

Chain SF

Ribosomal protein uS5

Chain Sb

Ribosomal protein eS26