IL_6ZJ3_264

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGU*A(PSU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_264 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3647

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZJ3|1|S1|C|1576
6ZJ3|1|S1|G|1577
6ZJ3|1|S1|U|1578
*
6ZJ3|1|S1|A|2080
6ZJ3|1|S1|PSU|2081
6ZJ3|1|S1|G|2082

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S3

Transfer RNA; tRNA

Chain S4

Transfer RNA; tRNA

Chain SH

Ribosomal protein uS7

Chain SL

Ribosomal protein uS9