IL_6ZJ3_265
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UAU*GCA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_265 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.3037
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZJ3|1|S1|U|1583
6ZJ3|1|S1|A|1584
6ZJ3|1|S1|U|1585
*
6ZJ3|1|S1|G|1949
6ZJ3|1|S1|C|1950
6ZJ3|1|S1|A|1951
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain S3
- Transfer RNA; tRNA
- Chain SL
- Ribosomal protein uS9
- Chain SR
- Ribosomal protein uS13
- Chain SW
- Ribosomal protein uS19
- Chain SX
- Ribosomal protein eS19
- Chain Sa
- Ribosomal protein eS25
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