IL_6ZJ3_266

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_266 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.1196

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZJ3|1|S1|G|1588
6ZJ3|1|S1|G|1589
*
6ZJ3|1|S1|C|1944
6ZJ3|1|S1|A|1945
6ZJ3|1|S1|C|1946

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

Transfer RNA; tRNA

Chain S3

Transfer RNA; tRNA

Chain SR

Ribosomal protein uS13

Chain SW

Ribosomal protein uS19

Chain Sa

Ribosomal protein eS25