IL_6ZJ3_270

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMG)U*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_270 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.161

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|S1|G|1680
6ZJ3|1|S1|OMG|1681
6ZJ3|1|S1|U|1682
*
6ZJ3|1|S1|G|1923
6ZJ3|1|S1|C|1924
6ZJ3|1|S1|U|1925

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

Transfer RNA; tRNA

Chain SC

Ribosomal protein uS3

Chain Se

Ribosomal protein eS30