IL_6ZJ3_284

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGG(A2M)UA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_284 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1029

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ZJ3|1|S1|G|2043
6ZJ3|1|S1|G|2044
6ZJ3|1|S1|G|2045
6ZJ3|1|S1|A2M|2046
6ZJ3|1|S1|U|2047
6ZJ3|1|S1|A|2048
*
6ZJ3|1|S1|U|2069
6ZJ3|1|S1|U|2070
6ZJ3|1|S1|G|2071
6ZJ3|1|S1|A|2072
6ZJ3|1|S1|A|2073
6ZJ3|1|S1|C|2074

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SR

Ribosomal protein uS13

Chain SX

Ribosomal protein eS19

Chain Sa

Ribosomal protein eS25