IL_6ZJ3_286

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGG*C(PSU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_286 not in the Motif Atlas

Geometric match to IL_1L9A_004

Geometric discrepancy: 0.3141

The information below is about IL_1L9A_004

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZJ3|1|S1|U|2051
6ZJ3|1|S1|G|2052
6ZJ3|1|S1|G|2053
*
6ZJ3|1|S1|C|2064
6ZJ3|1|S1|PSU|2065
6ZJ3|1|S1|G|2066

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SR

Ribosomal protein uS13

Chain SW

Ribosomal protein uS19

Chain SX

Ribosomal protein eS19