IL_6ZJ3_289

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMC)C(5MC)G*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|2141
6ZJ3|1|S1|OMC|2142
6ZJ3|1|S1|C|2143
6ZJ3|1|S1|5MC|2144
6ZJ3|1|S1|G|2145
*
6ZJ3|1|S1|C|2265
6ZJ3|1|S1|G|2266
6ZJ3|1|S1|U|2267
6ZJ3|1|S1|A|2268
6ZJ3|1|S1|A|2269
6ZJ3|1|S1|C|2270

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain S3

Transfer RNA; tRNA

Chain S5

A-site tRNA