IL_6ZJ3_290

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_290 not in the Motif Atlas

Geometric match to IL_5MWI_004

Geometric discrepancy: 0.1655

The information below is about IL_5MWI_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|S1|G|2145
6ZJ3|1|S1|U|2146
6ZJ3|1|S1|C|2147
*
6ZJ3|1|S1|G|2263
6ZJ3|1|S1|U|2264
6ZJ3|1|S1|C|2265

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain S2

Transfer RNA; tRNA

Chain S3

Transfer RNA; tRNA

Chain S5

A-site tRNA