IL_6ZJ3_299
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGAAAAUG*CAGCAAACCCUGUG
- Length
- 22 nucleotides
- Bulged bases
- 6ZJ3|1|LB|A|286, 6ZJ3|1|LB|A|289, 6ZJ3|1|LB|U|290, 6ZJ3|1|LC|C|323, 6ZJ3|1|LC|A|324, 6ZJ3|1|LC|U|330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LB|U|284
6ZJ3|1|LB|G|285
6ZJ3|1|LB|A|286
6ZJ3|1|LB|A|287
6ZJ3|1|LB|A|288
6ZJ3|1|LB|A|289
6ZJ3|1|LB|U|290
6ZJ3|1|LB|G|291
*
6ZJ3|1|LC|C|320
6ZJ3|1|LC|A|321
6ZJ3|1|LC|G|322
6ZJ3|1|LC|C|323
6ZJ3|1|LC|A|324
6ZJ3|1|LC|A|325
6ZJ3|1|LC|A|326
6ZJ3|1|LC|C|327
6ZJ3|1|LC|C|328
6ZJ3|1|LC|C|329
6ZJ3|1|LC|U|330
6ZJ3|1|LC|G|331
6ZJ3|1|LC|U|332
6ZJ3|1|LC|G|333
Current chains
- Chain LB
- LSU rRNA chain 1
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LV
- 60S ribosomal protein L7a
- Chain Lb
- Ribosomal protein eL15
- Chain Lp
- Ribosomal protein uL29
- Chain Lx
- Ribosomal protein eL36
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