IL_6ZJ3_303

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GA*U(PSU)U

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|PSU|1075

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_303 not in the Motif Atlas

Homologous match to IL_8C3A_027

Geometric discrepancy: 0.5595

The information below is about IL_8C3A_027

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZJ3|1|LE|G|1051
6ZJ3|1|LE|A|1052
*
6ZJ3|1|LE|U|1074
6ZJ3|1|LE|PSU|1075
6ZJ3|1|LE|U|1076

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Ribosomal protein eL13

Chain Le

Ribosomal protein eL18

Chain Lq

Ribosomal protein eL29