IL_6ZJ3_306
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(A2M)C*GC(A2M)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_306 not in the Motif Atlas
- Geometric match to IL_1Z7F_002
- Geometric discrepancy: 0.1057
- The information below is about IL_1Z7F_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
6ZJ3|1|LE|U|1120
6ZJ3|1|LE|A2M|1121
6ZJ3|1|LE|C|1122
*
6ZJ3|1|LE|G|1202
6ZJ3|1|LE|C|1203
6ZJ3|1|LE|A2M|1204
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Ly
- Ribosomal protein eL37
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