IL_6ZJ3_308

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGU(PSU)*G(OMU)A

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_308 not in the Motif Atlas

Homologous match to IL_8P9A_259

Geometric discrepancy: 0.3772

The information below is about IL_8P9A_259

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|LE|U|1168
6ZJ3|1|LE|G|1169
6ZJ3|1|LE|U|1170
6ZJ3|1|LE|PSU|1171
*
6ZJ3|1|LE|G|1188
6ZJ3|1|LE|OMU|1189
6ZJ3|1|LE|A|1190

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain Ly

Ribosomal protein eL37