IL_6ZJ3_310
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUG*(OMU)G
- Length
- 5 nucleotides
- Bulged bases
- 6ZJ3|1|LE|U|1173
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_310 not in the Motif Atlas
- Homologous match to IL_8P9A_260
- Geometric discrepancy: 0.2147
- The information below is about IL_8P9A_260
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 170
Unit IDs
6ZJ3|1|LE|C|1172
6ZJ3|1|LE|U|1173
6ZJ3|1|LE|G|1174
*
6ZJ3|1|LE|OMU|1185
6ZJ3|1|LE|G|1186
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Ly
- Ribosomal protein eL37
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