IL_6ZJ3_313

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_313 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.3434

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZJ3|1|LE|A|1329
6ZJ3|1|LE|G|1330
6ZJ3|1|LE|A|1331
*
6ZJ3|1|LE|PSU|1363
6ZJ3|1|LE|A|1364
6ZJ3|1|LE|PSU|1365

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LO

5S ribosomal RNA; 5S rRNA

Chain Lc

60S ribosomal protein L10

Chain Ld

Ribosomal protein uL18