IL_6ZJ3_318
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGGAGAG*(PSU)GUGUGC(OMG)
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LF|U|1849, 6ZJ3|1|LF|G|1853, 6ZJ3|1|LF|U|1880
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|C|1848
6ZJ3|1|LF|U|1849
6ZJ3|1|LF|G|1850
6ZJ3|1|LF|G|1851
6ZJ3|1|LF|A|1852
6ZJ3|1|LF|G|1853
6ZJ3|1|LF|A|1854
6ZJ3|1|LF|G|1855
*
6ZJ3|1|LF|PSU|1876
6ZJ3|1|LF|G|1877
6ZJ3|1|LF|U|1878
6ZJ3|1|LF|G|1879
6ZJ3|1|LF|U|1880
6ZJ3|1|LF|G|1881
6ZJ3|1|LF|C|1882
6ZJ3|1|LF|OMG|1883
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
- Chain Lf
- Ribosomal protein eL19
- Chain Li
- Ribosomal protein uL22
- Chain Lt
- Ribosomal protein eL31
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