IL_6ZJ3_325

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GG(A2M)A*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_325 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.1068

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6ZJ3|1|LH|G|2356
6ZJ3|1|LH|G|2357
6ZJ3|1|LH|A2M|2358
6ZJ3|1|LH|A|2359
*
6ZJ3|1|LH|U|2824
6ZJ3|1|LH|OMC|2825

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain LY

Ribosomal protein uL14