IL_6ZJ3_326
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GG(A2M)AG(PSU)CGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, PSU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_326 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.1749
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LH|G|2356
6ZJ3|1|LH|G|2357
6ZJ3|1|LH|A2M|2358
6ZJ3|1|LH|A|2359
6ZJ3|1|LH|G|2360
6ZJ3|1|LH|PSU|2361
6ZJ3|1|LH|C|2362
6ZJ3|1|LH|G|2363
6ZJ3|1|LH|G|2364
*
6ZJ3|1|LH|C|2821
6ZJ3|1|LH|U|2822
6ZJ3|1|LH|G|2823
6ZJ3|1|LH|U|2824
6ZJ3|1|LH|OMC|2825
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
Coloring options: