IL_6ZJ3_331

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAA*(PSU)ACC

Length

7 nucleotides

Bulged bases

6ZJ3|1|LH|A|2885, 6ZJ3|1|LI|C|3570

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_331 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.2884

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZJ3|1|LH|G|2884
6ZJ3|1|LH|A|2885
6ZJ3|1|LH|A|2886
*
6ZJ3|1|LI|PSU|3568
6ZJ3|1|LI|A|3569
6ZJ3|1|LI|C|3570
6ZJ3|1|LI|C|3571

Current chains

Chain LH

LSU rRNA chain 7

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain Li

Ribosomal protein uL22