IL_6ZJ3_332

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

(OMG)U(PSU)*AC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LH|U|2898

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_332 not in the Motif Atlas

Homologous match to IL_8P9A_321

Geometric discrepancy: 0.4191

The information below is about IL_8P9A_321

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ZJ3|1|LH|OMG|2897
6ZJ3|1|LH|U|2898
6ZJ3|1|LH|PSU|2899
*
6ZJ3|1|LI|A|3397
6ZJ3|1|LI|C|3398

Current chains

Chain LH

LSU rRNA chain 7

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LB

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain La

Ribosomal protein uL15