IL_6ZJ3_334

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

(OMG)CA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_334 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1643

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZJ3|1|LH|OMG|2925
6ZJ3|1|LH|C|2926
6ZJ3|1|LH|A|2927
*
6ZJ3|1|LI|U|3009
6ZJ3|1|LI|U|3010
6ZJ3|1|LI|U|3011

Current chains

Chain LH

LSU rRNA chain 7

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LV

60S ribosomal protein L7a

Chain SA

Ribosomal protein eS1