IL_6ZJ3_337
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GC(PSU)*GA(PSU)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_337 not in the Motif Atlas
- Homologous match to IL_8P9A_330
- Geometric discrepancy: 0.4968
- The information below is about IL_8P9A_330
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6ZJ3|1|LI|G|3410
6ZJ3|1|LI|C|3411
6ZJ3|1|LI|PSU|3412
*
6ZJ3|1|LI|G|3449
6ZJ3|1|LI|A|3450
6ZJ3|1|LI|PSU|3451
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lq
- Ribosomal protein eL29
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
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