IL_6ZJ3_340

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUG*(PSU)CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_340 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.3129

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6ZJ3|1|LI|C|3418
6ZJ3|1|LI|U|3419
6ZJ3|1|LI|G|3420
*
6ZJ3|1|LI|PSU|3440
6ZJ3|1|LI|C|3441
6ZJ3|1|LI|G|3442

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LO

5S ribosomal RNA; 5S rRNA

Chain Lc

60S ribosomal protein L10

Chain S2

Transfer RNA; tRNA