IL_6ZJ3_354

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGA*(PSU)(OMG)AGU(A2M)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_354 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.3773

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6ZJ3|1|S1|G|618
6ZJ3|1|S1|G|619
6ZJ3|1|S1|A|620
*
6ZJ3|1|S1|PSU|640
6ZJ3|1|S1|OMG|641
6ZJ3|1|S1|A|642
6ZJ3|1|S1|G|643
6ZJ3|1|S1|U|644
6ZJ3|1|S1|A2M|645
6ZJ3|1|S1|U|646
6ZJ3|1|S1|C|647

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain Se

Ribosomal protein eS30