IL_6ZJ3_358

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAAAA(OMC)UC*GUCCAUC

Length

15 nucleotides

Bulged bases

6ZJ3|1|S1|C|1075

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|S1|G|1032
6ZJ3|1|S1|A|1033
6ZJ3|1|S1|A|1034
6ZJ3|1|S1|A|1035
6ZJ3|1|S1|A|1036
6ZJ3|1|S1|OMC|1037
6ZJ3|1|S1|U|1038
6ZJ3|1|S1|C|1039
*
6ZJ3|1|S1|G|1073
6ZJ3|1|S1|U|1074
6ZJ3|1|S1|C|1075
6ZJ3|1|S1|C|1076
6ZJ3|1|S1|A|1077
6ZJ3|1|S1|U|1078
6ZJ3|1|S1|C|1079

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS8

Chain SU

Ribosomal protein uS17