IL_6ZJ3_360

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

6ZJ3|1|S1|G|1560

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_360 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.358

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

6ZJ3|1|S1|G|1559
6ZJ3|1|S1|G|1560
6ZJ3|1|S1|A|1561
*
6ZJ3|1|S1|U|2130
6ZJ3|1|S1|PSU|2131

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain S3

Transfer RNA; tRNA

Chain S5

A-site tRNA

Chain Sb

Ribosomal protein eS26