IL_6ZJ3_367

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMC)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_367 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0979

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ZJ3|1|S1|G|2141
6ZJ3|1|S1|OMC|2142
6ZJ3|1|S1|C|2143
6ZJ3|1|S1|5MC|2144
*
6ZJ3|1|S1|G|2266
6ZJ3|1|S1|U|2267
6ZJ3|1|S1|A|2268
6ZJ3|1|S1|A|2269
6ZJ3|1|S1|C|2270

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain S3

Transfer RNA; tRNA

Chain S5

A-site tRNA