IL_6ZLW_062

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_062 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.073

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZLW|1|2|C|1230
6ZLW|1|2|C|1231
6ZLW|1|2|U|1232
*
6ZLW|1|2|G|1526
6ZLW|1|2|C|1527
6ZLW|1|2|G|1528

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16

Chain T

40S ribosomal protein S18

Chain U

40S ribosomal protein S19