IL_6ZLW_064
3D structure
- PDB id
- 6ZLW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZLW_064 not in the Motif Atlas
- Homologous match to IL_4V88_446
- Geometric discrepancy: 0.1794
- The information below is about IL_4V88_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZLW|1|2|G|1270
6ZLW|1|2|C|1271
6ZLW|1|2|C|1272
*
6ZLW|1|2|G|1510
6ZLW|1|2|U|1511
6ZLW|1|2|C|1512
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein S10
- Chain Q
- 40S ribosomal protein S15
- Chain f
- 40S ribosomal protein S29
- Chain g
- Ubiquitin-40S ribosomal protein S27a
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