IL_6ZLW_066

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUUG*CUCGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZLW|1|2|A|1287
6ZLW|1|2|U|1288
6ZLW|1|2|U|1289
6ZLW|1|2|G|1290
*
6ZLW|1|2|C|1309
6ZLW|1|2|U|1310
6ZLW|1|2|C|1311
6ZLW|1|2|G|1312
6ZLW|1|2|A|1313
6ZLW|1|2|U|1314

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S10

Chain O

40S ribosomal protein S12

Chain f

40S ribosomal protein S29

Chain g

Ubiquitin-40S ribosomal protein S27a