IL_6ZLW_080

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_080 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0794

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6ZLW|1|2|G|1604
6ZLW|1|2|G|1605
6ZLW|1|2|G|1606
6ZLW|1|2|A|1607
6ZLW|1|2|U|1608
6ZLW|1|2|C|1609
6ZLW|1|2|G|1610
*
6ZLW|1|2|C|1629
6ZLW|1|2|A|1630
6ZLW|1|2|U|1631
6ZLW|1|2|G|1632
6ZLW|1|2|A|1633
6ZLW|1|2|A|1634
6ZLW|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S18

Chain U

40S ribosomal protein S19