IL_6ZM7_013

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6ZM7|1|L5|C|185, 6ZM7|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|180
6ZM7|1|L5|C|181
6ZM7|1|L5|G|182
6ZM7|1|L5|C|183
6ZM7|1|L5|U|184
6ZM7|1|L5|C|185
6ZM7|1|L5|G|186
6ZM7|1|L5|U|187
6ZM7|1|L5|G|188
6ZM7|1|L5|G|189
*
6ZM7|1|L5|C|252
6ZM7|1|L5|G|253
6ZM7|1|L5|G|254
6ZM7|1|L5|C|255
6ZM7|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37