IL_6ZM7_067

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6ZM7|1|L5|C|1707, 6ZM7|1|L5|G|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|1694
6ZM7|1|L5|U|1695
6ZM7|1|L5|C|1696
6ZM7|1|L5|G|1697
6ZM7|1|L5|C|1698
6ZM7|1|L5|A|1699
6ZM7|1|L5|G|1700
6ZM7|1|L5|A|1701
6ZM7|1|L5|C|1702
6ZM7|1|L5|C|1703
6ZM7|1|L5|C|1704
6ZM7|1|L5|G|1705
6ZM7|1|L5|A|1706
6ZM7|1|L5|C|1707
6ZM7|1|L5|G|1708
6ZM7|1|L5|C|1709
6ZM7|1|L5|C|1714
6ZM7|1|L5|C|1715
6ZM7|1|L5|G|1716
6ZM7|1|L5|C|1717
6ZM7|1|L5|C|1718
6ZM7|1|L5|A|1719
6ZM7|1|L5|C|1720
6ZM7|1|L5|G|1721
*
6ZM7|1|L5|C|1841
6ZM7|1|L5|G|1842

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29