IL_6ZM7_076

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_076 not in the Motif Atlas

Homologous match to IL_5TBW_046

Geometric discrepancy: 0.16

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZM7|1|L5|A|1858
6ZM7|1|L5|C|1859
6ZM7|1|L5|U|1860
*
6ZM7|1|L5|A|1874
6ZM7|1|L5|C|1875
6ZM7|1|L5|U|1876

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29