IL_6ZM7_086

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6ZM7|1|L5|G|1975

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_086 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3777

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZM7|1|L5|G|1973
6ZM7|1|L5|U|1974
6ZM7|1|L5|G|1975
6ZM7|1|L5|G|1976
6ZM7|1|L5|C|1977
*
6ZM7|1|L5|G|1989
6ZM7|1|L5|A|1990
6ZM7|1|L5|A|1991
6ZM7|1|L5|U|1992
6ZM7|1|L5|C|1993

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12