IL_6ZM7_130

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUG*UGAUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|3948
6ZM7|1|L5|A|3949
6ZM7|1|L5|U|3950
6ZM7|1|L5|G|3951
*
6ZM7|1|L5|U|4060
6ZM7|1|L5|G|4061
6ZM7|1|L5|A|4062
6ZM7|1|L5|U|4063
6ZM7|1|L5|C|4064
6ZM7|1|L5|G|4065

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a