IL_6ZM7_141

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_141 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1052

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZM7|1|L5|C|4412
6ZM7|1|L5|C|4413
6ZM7|1|L5|A|4414
6ZM7|1|L5|A|4415
6ZM7|1|L5|G|4416
*
6ZM7|1|L5|C|4426
6ZM7|1|L5|G|4427
6ZM7|1|L5|A|4428
6ZM7|1|L5|C|4429
6ZM7|1|L5|G|4430

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40