3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAU*ACC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZM7_147 not in the Motif Atlas
Homologous match to IL_8C3A_120
Geometric discrepancy: 0.0824
The information below is about IL_8C3A_120
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6ZM7|1|L5|G|4495
6ZM7|1|L5|A|4496
6ZM7|1|L5|U|4497
*
6ZM7|1|L5|A|4503
6ZM7|1|L5|C|4504
6ZM7|1|L5|C|4505

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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