IL_6ZM7_196

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

6ZM7|1|S2|C|139, 6ZM7|1|S2|C|142, 6ZM7|1|S2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|S2|G|130
6ZM7|1|S2|C|139
6ZM7|1|S2|U|140
6ZM7|1|S2|A|141
6ZM7|1|S2|C|142
6ZM7|1|S2|U|143
6ZM7|1|S2|U|144
*
6ZM7|1|S2|A|175
6ZM7|1|S2|U|176
6ZM7|1|S2|G|177
6ZM7|1|S2|C|178
6ZM7|1|S2|C|179
6ZM7|1|S2|G|180
6ZM7|1|S2|A|181
6ZM7|1|S2|C|182
*
6ZM7|1|S2|A|175
6ZM7|1|S2|U|176
6ZM7|1|S2|G|177
6ZM7|1|S2|C|178
6ZM7|1|S2|C|179
6ZM7|1|S2|G|180
6ZM7|1|S2|A|181
6ZM7|1|S2|C|182

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6