IL_6ZM7_216

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_216 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2388

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6ZM7|1|S2|G|535
6ZM7|1|S2|A|536
6ZM7|1|S2|C|537
*
6ZM7|1|S2|G|546
6ZM7|1|S2|G|547
6ZM7|1|S2|C|548

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Se

40S ribosomal protein S30