IL_6ZM7_219

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6ZM7|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_219 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3149

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZM7|1|S2|G|606
6ZM7|1|S2|U|607
6ZM7|1|S2|C|608
*
6ZM7|1|S2|G|635
6ZM7|1|S2|C|636

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain CF

Non-structural protein 1

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30