IL_6ZM7_228

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_228 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1081

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ZM7|1|S2|G|874
6ZM7|1|S2|A|875
6ZM7|1|S2|C|876
*
6ZM7|1|S2|G|910
6ZM7|1|S2|C|911
6ZM7|1|S2|C|912

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11