IL_6ZM7_295

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

6ZM7|1|S2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_295 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.396

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZM7|1|S2|A|1282
6ZM7|1|S2|C|1283
6ZM7|1|S2|A|1284
6ZM7|1|S2|G|1285
6ZM7|1|S2|G|1286
6ZM7|1|S2|A|1287
*
6ZM7|1|S2|U|1314
6ZM7|1|S2|U|1315

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a