IL_6ZME_002

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZME_002 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2492

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6ZME|1|CC|U|27
6ZME|1|CC|C|28
*
6ZME|1|CC|G|42
6ZME|1|CC|G|43
6ZME|1|CC|A|44

Current chains

Chain CC

tRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain SF

40S ribosomal protein S5