IL_6ZME_013

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6ZME|1|L5|C|185, 6ZME|1|L5|G|186, 6ZME|1|L5|U|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|180
6ZME|1|L5|C|181
6ZME|1|L5|G|182
6ZME|1|L5|C|183
6ZME|1|L5|U|184
6ZME|1|L5|C|185
6ZME|1|L5|G|186
6ZME|1|L5|U|187
6ZME|1|L5|G|188
6ZME|1|L5|G|189
*
6ZME|1|L5|C|252
6ZME|1|L5|G|253
6ZME|1|L5|G|254
6ZME|1|L5|C|255
6ZME|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37